Throughput = Efficiency * Link Capacity
So, first we will calculate the efficiency of stop and wait,
Efficiency (of stop and wait)= $tx/(tx+2tp)$
where tx = transmission time of packet.
and tp = one way latency
So, tx = L/B = $\frac{1000*10^3}{10^6}$ = 1msec
2*tp = 100msec (round trip time)
So, efficiency = $\frac{1}{1+100} = 0.0099 = 0.01(approx)$
Now throughput =efficiency * Link capacity = $\frac{0.01*10^6}{10^3} = 10KBps$